| Salt Creek Near Ashland, NE |
| Sappa Creek Near Stamford, NE |
| Shell Creek Near Columbus, NE |
| Silver Creek, At Mile 4 Near Silver Creek, NE |
| South Fork Republican River Near Benkelman, NE |
| South Loup River At Arnold, NE |
| South Loup River At Saint Michael, NE |
| South Omaha Creek At Walthill, NE |
| South Papillion Creek At Chalco, NE |
| South Papillion Creek Near Gretna, NE |
| South Platte River At Roscoe, NE |
| Spring Creek Near Overton, NE |
| Stevens Creek Near Lincoln, NE |
| Thomas Creek Near Bennington, NE |
| Turkey Creek Near Dewitt, NE |
| Verdigre Creek Near Verdigre, NE |
| Wahoo Creek At Ashland, NE |
| Wahoo Creek At Ithaca, NE |
| Warm Slough Near Central City, NE |
| Weeping Water Creek At Union, NE |
| West Papillion Creek At Elkhorn, NE |
| West Papillion Creek At Millard, NE |
| West Papillion Creek At Pacific St At Omaha, NE |
| Willow Creek Near Foster, NE |
| Wood River At Grand Island, NE |
