| Allegheny River At Olean, NY |
| Allegheny River At Salamanca, NY |
| Allen Creek Near Rochester, NY |
| Ausable River Near Au Sable Forks, NY |
| Batavia Kill At Red Falls Near Prattsville, NY |
| Batten Kill Below Mill At Battenville, NY |
| Bear Kill Near Prattsville, NY |
| Beaver Kill At Cooks Falls, NY |
| Beaver River At Croghan, NY |
| Bellmore Creek Near Bellmore, NY |
| Birch Creek At Big Indian, NY |
| Biscuit Bk Above Pigeon Bk At Frost Valley, NY |
| Black Creek At Churchville, NY |
| Black River At Watertown, NY |
| Black River Near Boonville, NY |
| Bouquet River At Willsboro, NY |
| Bronx River At Ny Botanical Garden At Bronx, NY |
| Buffalo Creek At Gardenville, NY |
| Bush Kill Below Maltby Hollow Bk At West Shokan, NY |
| Bush Kill Near Arkville, NY |
| Byram River At Pemberwick, NY |
| Callicoon Creek At Callicoon, NY |
| Canacadea Creek Near Hornell, NY |
| Canajoharie Creek Near Canajoharie, NY |
| Canandaigua Outlet At Chapin, NY |
| Canisteo River At Arkport, NY |
| Canisteo River At West Cameron, NY |
| Canisteo River Below Canacadea Creek At Hornell, NY |
| Catskill Creek Near Catskill, NY |
| Cattaraugus Creek At Gowanda, NY |
| Cayuga Creek Near Lancaster, NY |
| Cayuga Inlet At Ithaca, NY |
| Cazenovia Creek At Ebenezer, NY |
| Chadakoin River At Falconer, NY |
| Chemung River At Chemung, NY |
| Chemung River At Corning, NY |
| Chemung River At Elmira, NY |
| Chenango River At Greene, NY |
| Chenango River At Oxford, NY |
| Chenango River At Sherburne, NY |
| Chenango River Near Chenango Forks, NY |
| Chestnut Creek At Grahamsville, NY |
| Cohocton River At Avoca, NY |
| Cohocton River At Bath, NY |
| Cohocton River Near Campbell, NY |
| Cold Spring Brook At Cold Spring Harbor, NY |
| Connetquot Bk Near Central Islip, NY |
| Cross River At Katonah, NY |
| Cross River Near Cross River, NY |
| Croton River At New Croton Dam Near Croton-On-Hudson, NY |
