| Indian River Near Indian Lake, NY |
| Irondequoit Creek Above Blossom Rd Near Rochester, NY |
| Kinderhook Creek At Rossman, NY |
| Ley Creek At Park Street, Syracuse, NY |
| Little Ausable River Near Valcour, NY |
| Little Beaver Kill At Beechford Near Mt Tremper, NY |
| Little Chazy River Near Chazy, NY |
| Little Delaware River Near Delhi, NY |
| Little Salmon River At Bombay, NY |
| Mahwah River Near Suffern, NY |
| Manor Kill At West Conesville Near Gilboa, NY |
| Massapequa Creek At Massapequa, NY |
| Mettawee River Near Middle Granville, NY |
| Mill Brook Near Dunraven, NY |
| Mine Kill Near North Blenheim, NY |
| Mohawk River At Cohoes, NY |
| Mohawk River At Freeman's Bridge At Schenectady, NY |
| Mohawk River At Lock 8 Near Schenectady, NY |
| Mohawk River Below Delta Dam Near Rome, NY |
| Mohawk River Near Little Falls, NY |
| Mongaup River At Mongaup Valley, NY |
| Mongaup River Near Mongaup, NY |
| Moose River At Mckeever, NY |
| Muscoot River At Baldwin Place, NY |
| Muscoot River Below Dam At Amawalk, NY |
| Neversink River At Bridgeville, NY |
| Neversink River At Godeffroy, NY |
| Neversink River At Neversink, NY |
| Neversink River Near Claryville, NY |
| Ninemile Creek At Lakeland, NY |
| Nissequogue River Near Smithtown, NY |
| Normans Kill At Albany, NY |
| North Branch Salmon River At Redfield, NY |
| Oak Orchard Creek Near Kenyonville, NY |
| Oak Orchard Creek Near Shelby, NY |
| Oatka Creek At Garbutt, NY |
| Oatka Creek At Warsaw, NY |
| Oneida Creek At Oneida, NY |
| Oneida River Near Euclid, NY |
| Onondaga Creek At Dorwin Ave., Syracuse, NY |
| Onondaga Creek At Spencer St., Syracuse, NY |
| Onondaga Creek Near Cardiff, NY |
| Oswegatchie River Near Heuvelton, NY |
| Oswego River At Lock 7, Oswego, NY |
| Oswego River Near Phoenix, NY |
| Otselic River At Cincinnatus, NY |
| Ouleout Creek At East Sidney, NY |
| Owasco Inlet Below Aurora Street At Moravia, NY |
| Owasco Outlet At Genesee St., Auburn, NY |
| Peconic River At Riverhead, NY |
